Publications
2023
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Assis BA*, Sullivan AP*, Marciniak S, Bergey CM, Garcia V, Szpiech ZA, Langkilde T, Perry GH. 2023. Genomic signatures of adaptation in native lizards exposed to human-introduced fire ants. bioRxiv. *Authors contributed equally
[Link to article] |
2022
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Hussey GA, Zhang C, Sullivan AP, Fenyö D, Schluter J. 2022. The MTIST platform: A microbiome time series inference standardized test simulation, dataset, and scoring systems. bioRxiv. doi: 10.1101/2022.10.18.512783.
[Link to article] Bernard L, Venzon M, Klein J, Axelrad JE, Zhang C, Sullivan AP, Hussey GA, Casanovas-Massana A, Noval MG, Valero-Jimenez AM, Gago J, Putzel G, Pironti A, Wilder E, Yale IMPACT Research Team, Thorpe LE, Littman DR, Dittmann M, Stapleford KA, Shopsin B, Torres VJ, Ko AI, Iwasaki A, Cadwell K, Schluter J. 2022. Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia. Nature Communications. doi: 10.1038/s41467-022-33395-6.
[Link to article] Sullivan AP, Godfrey LR, Lawler RR, Randrianatoandro H, Eccles L, Culleton B, Ryan TM, Perry GH. 2022. Potential evolutionary body size reduction in a Malagasy primate (Propithecus verreauxi) in response to human size-selective hunting pressure. American Journal of Biological Anthropology. doi: 10.1002/ajpa.24470.
[Link to article] [PDF] [Blog posts 1, 2] |
2021
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Westfall AK, Telemeco RS, Grizante MB, Waits DS, Clark AD, Simpson DY, Klabacka RL, Sullivan AP, Perry GH, Sears MW, Cox CL, Cox RM, Gifford ME, John-Alder HB, Langkilde T, Angilletta Jr. MJ, Leaché AD, Tollis M, Kusumi K, Schwartz TS. 2021. A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology. GigaScience. doi: 10.1093/gigascience/giab066.
[Link to article] [PDF] |
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Sullivan AP, Marciniak S, O'Dea A, Wake TA, Perry GH. 2021. Modern, archaeological, and paleontological DNA analysis of a human-harvested marine gastropod (Strombus pugilis) from Caribbean Panama. Molecular Ecology Resources. doi: 10.1111/1755-0998.13361.
[Link to article] [PDF] [Blog posts 1, 2] |
2018
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Aylward ML, Sullivan AP, Perry GH, Johnson SE, Louis EE. 2018. An environmental DNA sampling method for aye-ayes from their feeding traces. Ecology and Evolution 00:1-12. doi: 10.1002/ece3.4341.
[Link to article] [PDF] [Blog post] |
2017
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Sullivan AP, Bird DW, Perry GH. 2017. Human behavior as a long-term ecological driver of non-human evolution. Nature Ecology and Evolution 1: 0065. doi: 10.1038/s41559-016-0065.
[Link to article] [PDF] [Blog post] |
2017
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Sullivan AP, de Manuel M, Marques-Bonet T, Perry GH. 2017. An evolutionary medicine perspective on Neandertal extinction. Journal of Human Evolution 108: 62-71. doi: 10.1016/j.jhevol.2017.03.004.
[Link to article] [PDF] [Blog posts 1, 2] [Open access supplemental databases] |
2017
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Vukelic A, Cohen J, Sullivan AP, Perry GH. 2017. Extending genome-wide association study (GWAS) results to test classic anthropological hypotheses: Human third molar agenesis and the ‘probable mutation effect’. Human Biology 89: 157-169. doi: 10.13110/humanbiology.89.2.03.
[Link to article] |
2016
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Hubbard TD, Murray IA, Bisson WH, Sullivan AP, Sebastian A, Perry GH, Jablonski NG, Perdew GH. 2016. Divergent Ah receptor ligand selectivity during hominin evolution. Molecular Biology and Evolution 33(10): 2648-2658. doi: 10.1093/molbev/msw143.
[Link to article] [PDF] |
Published Conference Abstracts
2017
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Are jumping tree animals getting smaller over time because humans catch and eat the larger ones? Invited symposium: Up Goer Five PhysAnth Edition: Communicate Your Science Using English’s Ten Hundred Most Common Words. New Orleans, LA. American Association of Physical Anthropologists. Podium presentation.
[Link to abstract] [Link to YouTube video of talk] |
2016
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Ancient genetic diversity and an evolutionary medicine perspective on Neandertal extinction. Invited symposium: Joint AAPA-AAAG (American Association of Anthropological Genetics) Symposium. Atlanta, GA. American Association of Physical Anthropologists. Podium presentation.
[Link to abstract] |
Open Access Datasets
Repository for high-resolution 3D surface scans of modern and subfossil osteological elements collected from both extinct and extant lemur species by members of the Perry Lab, primarily at the University of Antananarivo, Madagascar.
Currently available: several Daubentonia robusta (giant aye-aye) elements, Daubentonia madagascariensis (aye-aye) hand, Archaeoindris fontoynontii femur |
Repository for high-resolution 3D surface scans of osteological Propithecus verreauxi (Verreaux’s sifaka) elements collected by Alexis P. Sullivan. Modern elements were collected, stored, and scanned at the Beza Mahafaly Special Reserve, Madagascar, and are indicated by “BMOC” (Beza Mahafaly Osteological Collection). Subfossil elements were collected at Taolambiby by Alan Walker in the 1960s and are currently housed with Laurie Godfrey at the University of Massachusetts at Amherst. The subfossil elements are indicated by “TAO-66” (Taolambiby 1966), and were scanned in the Zooarchaeology Lab at Penn State University. List of elements here.
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